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Lecture by Prof. Dr. Nassir Navab & invited speakers.
Module IN2021: 4+0 SWS, 6 ECTS, Praktische Informatik, Wahlfach
Time & Location:
- The classes and exam are in English.
Announcements:
Abstract
Computer science is playing an important, increasing role in medical practices. Medical imaging companies are no more asked by physicians to only produce images of anatomy. Instead, they are asked to design software and hardware systems to provide complex computer-aided solutions for diagnosis, intervention and therapy. There are more and more opportunities for computer science graduates to contribute to the development and deployment of medical solutions. Within the operating rooms, there is an increasing need for the integration and visualization of heterogeneous data acquired by numerous sensors.
This course on computer aided medical procedures exposes the students to the challenges of building the operating rooms of the future. The main focus of the course is in imaging technologies especially intra-operative imaging as well as the visualization of this data. Techniques like segmentation and registration will be explained in various classes.
There will be invited guests from the hospital Rechts der Isar and also medical companies in the classes. They will talk about the physical properties and the clinical use of the different modalitries and techniques. The invited guests will be announced in the course schedule below.
Here is a rough overview of the topics that were presented in last year's lecture:
- Introduction
- Computer-Aided Surgery and Exemplary Applications
- Image Processing and Segmentation
- Registration
- Basics of Tracking Technologies
- Visualization and Medical Augmented Reality
- Surgical Workflow - Analysis, Monitoring and Applications
- Basics of Radiography (X-Ray, CT etc.) - Physical Properties, Applications, Radiation Therapy
- Magnetic Resonance Imaging - Basics, Advanced MRI and Applications
- Ultrasound Imaging
- Nuclear Medicine (PET/SPECT)
For a more detailed overview, see last year's lecture.
Prerequisites:
- Interest in medical image processing
Benefits:
- Knowledge in medical image acquisition / image modalities
- Deep insight into medical image computing
This lecture is going to be succeeded by "Computer Aided Medical Procedures 2" (see summer term 2012 CAMP 2 lecture page) (2+2 SWS, 6 ECTS) in the next summer term (which is recommended, but not obligatory).
Course Schedule
A password is needed to access the lecture slides and materials. This will be announced in the first lecture.
Field Trips
Within the CAMP lecture, we try to bring students into contact with industrial leaders providing computer-aided medical systems and software. We plan to arrange the following trips for this lecture. Please note that other lectures overlapping with the field trip days will not be canceled or repeated.
Registration
- Field trips are free of charge, but the number of places is limited in each case
- Places for the trip are granted on a first came first served basis
- Students are required to register for the trips to attend
Registration for the visits and field trips will be done personally at the office of Peter Maday (03.13.035). To make sure all registered students will show up, a deposit of 20 EUR is required at the time of registration. Students are requested to bring the exact amount. The deposit will be returned after the field trips.
BrainLab AG
Date: Thursday 21/11/13, from 1PM
Registrations are closed now!
There will be a half-day field trip to BrainLAB AG. BrainLAB provides advanced radiotherapy, radiosurgery, neurosurgery, orthopedic and ENT surgery products, services, and software solutions worldwide.
Agenda
time  | Event | Guide |
|---|
| 16:00 | End of Tour |
| 15:30 | Company Tour | Petra Rinke (Customer Visit/Event Manager) |
| 15:00 | Coffee break |
| 14:00 | Product Presentation RT | Carsten Raupach (Senior Project Manager) |
| 13:00 | Product Presentation Neuro + Apps | Jens Witte (Director R&D Medical Data Enrichment) |
We will meet directly at BrainLAB at 12:45pm sharp . We cannot provide a bus for this field trip, so you have to get there by yourselves (you can share cars or go by public transport). The address is BrainLAB AG, Kapellenstr. 12, 85622 Feldkirchen.
A short extract about using public transport to arrive at Brainlab from the BrainLAB website:
"From Munich City take the S2 towards 'Erding/Markt Schwaben'. Exit at the 'Feldkirchen' stop. From here you can take a taxi or the regional bus 263, in the direction 'Messestadt West.' Brainlab is located a few meters walking distance from the 'Kapellenstraße' bus stop."
List of confirmed participants (max 25):
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Trip to ZEISS (max 30)
Date: Tuesday 21/01/14
Registrations are open now!
The presentations will be held in English!
We will meet directly at Zeiss at 12:40pm sharp . We cannot provide a bus for this field trip, so you have to get there by yourselves. The address is KistlerhofStrasse 75 81379 Munich. (Close to Aidenbachstrasse on the U5 line).
Map to Zeiss
Agenda:
| Time | Activity |
|---|
| 13:00-13:30 | Begrüßungsrede und vorstellen die CZM AG |
| 13:30-14:10 | NAC |
| 14:10-14:50 | Mikroskope |
| 14:50-15:30 | Callisto eye |
| 15:30-15:45 | Break |
| 15:45-16:15 | Advanced Mikroskopie und die Forschungen in Oberkochen |
| 16:15-16:45 | FORUM and Glaucoma workplace |
List of confirmed participants:
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Second trip to BrainLab AG (max 25)
Date: Tuesday 21/01/14
Registrations are open now!
There will be a half-day field trip to BrainLAB AG. BrainLAB provides advanced radiotherapy, radiosurgery, neurosurgery, orthopedic and ENT surgery products, services, and software solutions worldwide.
We will meet directly at BrainLAB AG at 12:45pm sharp. We cannot provide a bus for this field trip, so you have to get there by yourselves (you can share cars or go by public transport). The address is BrainLAB AG, Kapellenstr. 12, 85622 Feldkirchen.
Agenda
To be announced!
List of confirmed participants:
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Second trip to ZEISS (max 30)
Date: Tuesday 28/01/14
List of confirmed participants:
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Siemens AG Healthcare
Date: Tuesday 28/01/14
Registrations are open now!
There will be a half-day field trip to Siemens AG Healthcare in Erlangen. A bus will be provided, bringing students from TUM Garching to the Siemens site and back. The two Siemens sites in Erlangen and Forchheim serve as research and production sites for CT (Computed Tomography), AX (Angiography / X-Ray), MR (Magnetic Resonance Imaging), and SP (Special Products).
Agenda
Details to be announced soon.
Meeting location: Garching Forschungszentrum bus stop Map
Meeting time: 6:30AM
This is not a typo! The bus will arrive at 6:30AM and will leave at 6:50AM to get to Erlangen by 9AM. The bus will leave on time for the rest of the schedule to work out.
List of confirmed participants:
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Exam
Time & Location:
The final exam will take place on Fri, 07/02/14 between 4:30pm-6:30pm Location: MI Hörsaal 1
Details:
Type: written, closed book (i.e. no material allowed), approx. 90 minutes
The final exam covers all the materials from the course
Grading of the exam:
Approx. 80% for questions and problems to solve on the CAMP lectures.
Approx. 20% for questions on invited talks.
No questions about the field trips.
The exam results will be published at TUM-Online.
Sample questions for the exam: Sample questions
Registration:
Please register via TUM-Online under German title "Informatikanwendungen in der Medizin" (IN2021)
In case you can not (for any reason) register via TUM-Online, register personally at the Infopoint for Informatics Students (MI 00.10.013).
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Exam
There will be one exam.
Time & Location:
- The final exam will take place on Fri, 07/02/14 4:30pm-6:30pm Location: MI Hörsaal 1
Details:
- Type: written, closed book (i.e. no material allowed), approx. 90 minutes
- The final exam covers all the materials from the course
- Grading of the exam:
- Approx. 80% for questions and problems to solve on the CAMP lectures.
- Approx. 20% for questions on invited talks.
- No questions about the field trips.
- The exam results will be published at TUM-Online.
Sample questions for the exam:
Sample questions
Registration:
- Please register via TUM-Online under German title "Informatikanwendungen in der Medizin" (IN2021)
- In case you can not (for any reason) register via TUM-Online, register personally at the Infopoint for Informatics Students (MI 00.10.013).
Literature
Primary Literature
- Overview
- [Peters2008] Terry M. Peters, Kevin Cleary: Image-Guided Interventions: Technology and Applications. Springer, 1st edition 2008
- [Peters2000] Terry M. Peters: Image-guided surgery: From X-rays to Virtual Reality. Comput Methods Biomech Biomed Engin, 4(1):27-57, 2000
- Modalities
- Computed Tomography
- Magnetic Resonance Tomography
- Image Processing / (Filtering, Morpholgical Operations, and Basic Segmentation Methods):
- Segmentation:
- [Pham2000] Dzung L. Pham, Chenyang Xu, and Jerry L. Prince. Current methods in medical image segmentation. Annual Review of Biomedical Engineering, 2:315-337, 2000. doi:10.1146/annurev.bioeng.2.1.315
- [MortensenLiveWire1992] E. Mortensen, B. Morse, W. Barrett, and J. Udupa: Adaptive Boundary Detection Using "Live-Wire" Two-Dimensional Dynamic Programming. Computers in Cardiology 1992. pp. 635-638. doi:10.1109/CIC.1992.269378
- [FalcaoLiveWire1998] A. X. Falcão et al.: User-Steered Image Segmentation Paradigms: Live Wire and Live Lane. Graphical Models and Image Processing 1998. Vol. 60, No. 4, pp. 233-260. doi:10.1006/gmip.1998.0475
- [Kass1988] M. Kass, A. Witkin, and D. Terzopoulos. Snakes: Active contour models. International Journal of Computer Vision. Vol. 1, No. 4, pp. 321-331. 1988. doi:10.1007/BF00133570
- [SethianLevelSetFastMarching] J. A. Sethian: Level Set Methods and Fast Marching Methods. Evolving Interfaces in Computational Geometry, Fluid Mechanics, Computer Vision, and Materials Science. Cambridge University Press
- Registration:
- [Maintz1998] Maintz, J.B.A. & Viergever, M.A. A survey of medical image registration Medical Image Analysis, 1998, 2, 1-36
- [Hajnal2001] J. V. Hajnal, D. L. G. Hill, and D. J. Hawkes: Medical Image Registration. CRC Press, Biomedical Engineering Series, 2001
- Computer Vision:
- Computer Aided Surgery:
- [Grimson1999] W. Eric L. Grimson, Ron Kikinis, Ferenc A. Jolesz, and Peter McL. Black: Image-Guided Surgery. Scientific American, 280(6) pp. 62-69, 1999
Secondary Literature
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